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NTR: Laboratory

Open zhengj2007 opened this issue 2 years ago • 5 comments

OBIB team is requesting the term, 'laboratory'

Label: laboratory Textual definition: An organization that performs research, provides services, or processes materials. Definition source: eagle-i resource ontology Parent: organization

Related trackers: https://github.com/biobanking/biobanking/issues/83 https://github.com/obi-ontology/obi/issues/408

zhengj2007 avatar Oct 01 '21 15:10 zhengj2007

Discussed 2021-10-18. Not necessarily research organization. Need to elaborate on "services". Suggested definitions: An organization that develops or uses technologies to advance human understanding, An organization that performs assays, processes specimens, analyses data and similar services. May need related facility term. May want 'biomedical laboratory' as label. Will discuss with OBIB to improve definition. Children of this term in OBIB are helpful in improving definition: http://www.ontobee.org/ontology/OBIB?iri=http://vivoweb.org/ontology/core%23Laboratory

johnwjudkins avatar Oct 18 '21 16:10 johnwjudkins

Laboratories included in OBIB are ones which acquire, evaluate, and characterize tissues including analyzing components such as DNA/RNA. Of the proposed definitions from the 2021-10-18 OBI call, this one fits best: "An organization that performs assays, processes specimens, analyses data and similar services." Biomedical laboratory would be an appropriate label. Alternatively, could have a more specific "tissue laboratory" which is "An organization which acquires, evaluates, and/or characterizes tissues including analyzing components such as DNA/RNA."

cstoeckert avatar Nov 11 '21 16:11 cstoeckert

OBI proposes:

Label: Biomedical laboratory Textual definition: An organization that performs biomedical assays, processes biospecimens, analyses biomedical data and conducts similar planned processes. Definition source: OBIB Parent: organization

Discussed possibility of adding class axioms but will defer that at this time.

DanBerrios avatar Apr 11 '22 16:04 DanBerrios

may I suggested having the restriction to biomedical being reflected in the label?

mbrochhausen avatar Sep 29 '22 19:09 mbrochhausen

Here's a counter proposal from OBIB: An organization that performs assays, processes specimens, analyses data and conducts planned processes relevant to the life sciences.

cstoeckert avatar Sep 29 '22 20:09 cstoeckert

Should this be a subclass of ENVO's laboratory facility?

wdduncan avatar Jan 26 '23 20:01 wdduncan

Or to avoid confusion between a facility (human construction) and an organization perhaps use label "biomedical laboratory organization".

wdduncan avatar Jan 26 '23 20:01 wdduncan

2023-02-06 OK with updated label & definition (Chris & Bill). Jie will update PR.

johnwjudkins avatar Feb 06 '23 17:02 johnwjudkins

label: biomedical laboratory organization definition: An organization that performs assays, processes specimens, analyses data and conducts planned processes relevant to the life sciences.

zhengj2007 avatar Feb 06 '23 17:02 zhengj2007

OBI dev call Feb. 13, 2023. No objections. All approve. OK to update PR accordingly.

cstoeckert avatar Feb 13 '23 17:02 cstoeckert