Logan Drescher
Logan Drescher
On windows, there is a known bug where OpenJDK JREs will close `java.nio.channels.FileChannel` objects that called `FileChannel.map()` insufficiently, resulting in an inability to delete the referenced file, even after closing....
`__init__.py` does not call `import os`, despite `os` being called consistently throughout the module.
Vcell appears to have an issue where (on Release) VCell loses responsiveness, requiring the JVM itself to be killed.
In the process of exporting some published projects (ex.: biomodel_49411430 and biomodel_435789302), the resulting sedml file contains no tasks. A cursory look confirms that there are simulations in the VCell...
NB: Affects collaboration with SASCO (Janes Lab) When exporting multiple gifs of spatial results, the first one exports fine, but the remaining appear to have bugs that produce wildly incorrect...
Fixed issues with linux library linking in recent containers
This will most likely need a few passes to work.
Expands and Fixes a variety of HDF5 bugs
### Problem VCell Export code mostly works, but is unwieldy. What once started as a simple export feature has had additional features added in a quick but haphazard manner. Our...