Clare Pilgrim
Clare Pilgrim
From Schlegel et al. (2024) - FBrf0260535: >In total, 7% of proposed hemibrain types were combined to define new ‘composite’ types (for example, SIP078,SIP080) because the hemibrain split could not...
After asking Philipp about this on slack, it seems as though the confidence is not high enough to make these changes just based on the FlyWire data. I have started...
>We can potentially formalise/automate to properly do this for intrinsic neurons, I think we would need a new relationship - something like synaptic_terminals_restricted_to_region, but for now these missing SC axioms...
Wollf et al. (2015) - FBrf0227801 also propose 9 columns in layer 1 for 2 different cell types
Boyan et al. (2017) - FBrf0236238 also show 9 columns formed by the 4 columnar neuron lineages
Variable column numbers also found in other species - https://doi.org/10.1016/j.cobeha.2024.101390
We probably don't want to have terms for specific columns (as column width/number vary by cell type), so we can just keep the parent term 'fan-shaped body slice' (and rename...
Adding cell to each term will make the labels better match the existing meanings of these terms (reducing ambiguity) and this also matches usage in the [cell ontology](https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000187). It will...
closing epic as only one issue remaining (don't need to group)
This is a pretty long list and will take some time (I will have to check the definitions by going back to the references for all of these terms). Can...