Clare Pilgrim
Clare Pilgrim
Current 'existence overlaps' relationship is weird for an individual sample taken from an organism at a particular stage. I think what we need is a 'has stage' relationship to capture...
Discussed in phenotype ontology editors' call 02/24/22 'hyperplastic' - PATO:0000644 is currently defined to be an increase in size, but this is not always the case (if the cells are...
'semi-fertile' should be a subclass of 'decreased fertility'. Arguably, 'sterile' should also be a subclass of 'decreased fertility'. Then 'decreased fertility' would have to be moved out from under 'fertile',...
patterns for phenotypes of total amount of a sporadic process/behavior, bout length and bout number
e.g. sleep -increased/decreased total sleep (time spend asleep over total time) -increased/decreased bout number -increased/decreased bout duration see https://github.com/FlyBase/drosophila-phenotype-ontology/issues/101 discussed on upheno call 2022-06-30 add other examples to this ticket
[increasedRateOfBehavior.yaml](https://github.com/obophenotype/upheno/blob/master/src/patterns/dosdp-dev/increasedRateOfBehavior.yaml) I'm not comfortable with defining this as an improvement as it will often mean that the organism is performing worse than controls. For example, increased wandering behavior in larvae...
Currently the start or end point of the existence of the physical entity must be within the process or stage. Therefore the case where the existence of the physical entity...
for example - from RO: >[Typedef] id: RO:0002216 name: capable of part of def: "c stands in this relationship to p if and only if there exists some p' such...
fixes #754
Ideally, intrinsic neurons have all of their synapses restricted to a particular region of the CNS. In real life there may be a few stray synapses just outside the region....
https://www.ento.csiro.au/biology/drosophila/melanogaster.html# > Linking >To use the Atlas in a web document, link to our website and add a query string with the name of the structure you would like to...