ChristianDina

Dear RVtest team, I was wondering whether there would be a way to implement an input file giving user specified weights per variants (calculated from annotation for instance). Best wishes...

Hi all, I am finding this error : Error in rule extract_kmersGWAS: jobid: 1136 input: scripts/external/kmers_gwas/v0.3-beta.zip output: scripts/external/kmers_gwas/kmers_gwas.py, scripts/external/kmers_gwas/bin log: logs/build_kmers_gwas/extract_kmersGWAS.unzip.log (check log file(s) for error details) conda-env: /CONDAS/users/dina-c/snmk-env-default/df67cf55a679a080af7c665814d3493a_ shell:...

Hi all, I managed to run (I think) tje kgwasflow. However, I am roamign the output files and find that in the result directory I have all the reads while...

Something about string expected and not found.

1

kgwasflow/lib/python3.11/site-packages/kgwasflow-1.2.3-py3.11.egg/workflow/rules/common.smk, line 91: sequence item 0: expected str instance, PosixPath found Line 91 is : config_file= ", ".join(workflow.configfiles)

Did anyone meet this error. This seems to happen on reads that have run with kgwasflow and happened several times (throught this may be an incomplete result). And the log...