Error on result/reads/../input_files.txt

[ChristianDina]

Did anyone meet this error. This seems to happen on reads that have run with kgwasflow and happened several times (throught this may be an incomplete result). And the log file is empty

Error in rule kmc_canonical: jobid: 1021 input: results/reads/B00HOQU/input_files.txt output: results/kmers_count/B00HOQU/output_kmc_canon.kmc_suf, results/kmers_count/B00HOQU/output_kmc_canon.kmc_pre, results/kmers_count/B00HOQU/kmc_canonical.done log: logs/count_kmers/kmc/B00HOQU/kmc_canon.log (check log file(s) for error details) conda-env: /CONDAS/users/dina-c/snmk-env-default/8cf2dd55151db0fd70913609e8931b24_ shell:

    kmc -t8  -v -k31 -ci2         @results/reads/B00HOQU/input_files.txt results/kmers_count/B00HOQU/output_kmc_canon results/kmers_count/B00HOQU         1> results/kmers_count/B00HOQU/kmc_canon.1 2> results/kmers_count/B00HOQU/kmc_canon.2         > logs/count_kmers/kmc/B00HOQU/kmc_canon.log

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)