Carson J Miller

I'll be into work shortly and am more than happy to help out!

@jfy133 back in action part2. I'm still experimenting with the best way to add the `-l` option, but will let you know when I'm ready for another review!

Yes I can! I am in the middle of a wet-lab onslaught at the moment and have fallen behind on nf-core stuff, but am hoping to be back at it...

@maxulysse That's correct, no subcommands or other usage @famosab Thanks for the suggestions, I'll go through and make those fixes now!

@famosab @maxulysse Would either of you be able to take another look at this?

@nf-core-bot fix linting

Regarding your questions: 1) I think it would be a good idea to create an umbrella workflow for generating samplesheets for any downstream nf-core pipeline 2) Great suggestion, I will...

Just went through the code/ran some tests and this update looks great! Would probably be worth adding a `test_assembly_input` profile, but that can probably be added when we implement nf-test

@nf-core-bot fix linting

@jennylsmith LGTM! I think you should be good to merge it!