Benchmark-Models-PEtab
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Benchmarking-Initiative
Visualization files for all models (list)
This issue serves as an overview of which models already have the visualization file. During the work on each model this model's issue should be re-opened. Once all models have one this can be closed.
Models which already have a visualization file:
- Isensee
- Chen
- Fujita
- Swameye_PNAS2003
- Boehm
- Bruno_JExpBio2016
- Raia_CancerResearch2011
Since a lacking visualization file is not a PEtab error, reopening LeonardSchmiester/Benchmark-Models#53 didn't seem to fit. But of course this can be discussed. Also re-opening all models' issues could work but seems a bit confusing
Fujita does not actually have a file yet. It only serves as example for no-file visualization in PEtab. Hence I removed it from the list. Thanks @erikadudki for pointing it out.
I will work now on the visualization file for the Fujita model. Fujita visualization file finished!
Added visualization file for Swameye_PNAS2003. Plots fit with the plots in the publication.
Added visualization file for Bruno_JExpBio2016. Measurements of model1_data3 and model1_data6 seem a bit odd to me, since some measurements are in the range of [0,3] and others in the range of [1000,2500] Edit: change to log10-scale for those measurement values
Would be great if you could also update the YAML files when adding new vis tables (see Bruno for example).
Can this be merged/consolidated with issue #156?
Yes, thanks for the contributions from everyone so far
