Mike Lee

heya @TomOMaley :) So, it's possible this is due to macs having zsh as default instead of bash, but two things are making me thinks that's not what's going on....

oh and it's up to you of course, but if you did want to change your default shell, it could be done like this to swap to bash: ```bash chsh...

also adding note to myself that i'll need to add a note/some text either way when talking about the bash_profile @AstrobioMike, update that area

Hi there! Thanks for the kind words and the suggestion! That’s a great idea. I hear about BUSCO a lot, and know it’s a great resource, I just still have...

Ah of course! I’ll add in a step to check and notes about skipping the sub-setting stuff to be more clear. Thanks for the note, Michael! Hope all is well...

Hey look at that! haha, thanks @NogNoa. The man page on darwin (mac) versions isn't as clear, but it still seems to operate the same way. So at least on...

Hey there, @Calvin2077! Thanks for the kind words :) A genome shouldn’t be dropped due to the redundancy estimate, that’s just a notice. Are you sure it’s not in the...

Hmm, strange. Any chance you’d be able to share the fasta files and the input Untitled.txt file with me at MikeLee\bmsis.org so I can take a look? I’ll delete them...

@Calvin2077 and i tracked down that the issue was the input file listing the paths to the genomes didn't have a line-return character at the end of the file, and...

Note for myself I currently runn a `dos2unix`/`cmp` check on each input file, e.g.: https://github.com/AstrobioMike/GToTree/blob/39ce5f114391938612df1df49ee6cc759208bed9/bin/GToTree#L435 I can add the `--add-eol` argument so they will auto-add an end-of-line to end of...