Mike Lee

I'm curious too if there is any specific feedback from the devs on whether using salmon on bacterial coding sequences is generally seen as appropriate or not? (sorry if this...

Hey there :) Thanks for developing and maintaining DRAM :) > **Edit**: Seems @btemperton and I were writing at the same time, and I didn't see his until after i...

heya @mfreidin1975 :) First, sorry for the slow response, my email suddenly started sending my github issue notifications to spam :( I haven't used this in a while, but i...

Heya @pkothiyal and devs, I happened to peek at this too, and just because of the older version of R where I tested, version 1.16.0 of genomation was installed, and...

hey there, @SilasK :) thanks for your work here! I came across someone looking for a workflow suitable for solely nanopore data and found my way to this issue. It...

Oh excellent, thanks for the note about muffin, I will pass that along 🙂 No specific pressure from me to integrate a long-read specific path here, especially since you pointed...

Hey folks, I hit this too. (First, thank you to the developers and maintainers of kofamscan :)) In wondering why this came up only recently with KoFamScan (with no recent...

That's strange, @hegartybr. Not only does it work for me, but 3.3.0 is >= 3.1, ha (though I have seen some odd things in how conda compares versions sometimes if...

Ahhh, of course. I was looking at that, but i had it in my head that these (what i was talking about) were somehow python-related, and not just any possible...

heya folks! I had trouble with this for a while too, especially because i'm often installing gtdbtk on multiple systems. In the US, the mirror has worked well for me,...