Mike Lee

Hi there, @nandan75 :) Thanks for your interest in trying GToTree, but I'm terribly sorry to say I haven't had the opportunity to configure it to work in a container...

I totally understand! I have used it with nextflow with conda, but not with singularity :/ Any chance you could email me the gtotree_1.8.4--h9ee0642_0.sif you've already made, so maybe i...

Oh that's right, I forgot it was on bioconda, ha It is similarly easy using nextflow with conda, just environment yaml files instead of sif files or pointing to containers...

Stellar! Thanks so much, @naturepoker! I wonder what’s causing the small discrepancy in totals at the end, wonder if it’s as simple as me doing something like `>` vs `>=`...

Well, a lifetime later, I dug into this a bit but I wasn't able to recreate a discrepancy. My best guess is that the `gtt-gen-SCG-HMMs` program was pulling from a...

Heya, @Emmashipman, Just came across this while looking at some other issues here, are you sure the slurm compute node is connected to the location you are trying to access?...

You rock, @ctb! Thanks for the overview, details, and quick code example! I should randomly ping you more often :)

Awesome, thanks for plotting out a clear path! I looks forward to trying it out :)

note for fix in the future, if they have genus and species in the list, just remove genus

Just adding in that I also hit this issue when trying to simulate `--mode perfect` reads, in versions 2.0.0 and 2.0.1. Thank you, @Shruteek, for noting the workaround here to...