Anton Petrov

Hello, I noticed that prokka contains the [lists of domain-specific Rfam covariance models](https://github.com/tseemann/prokka/tree/master/db/cm/__build), which is very useful and helps focus just on the relevant RNAs. However, the SQL queries used...

Remove or review ncRNA terms that mirror Rfam families

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There are several ncRNA terms that refer to specific RNA families and mirror the [Rfam](https://rfam.org) RNA family classification, for example: - [OxyS_RNA](http://sequenceontology.org/browser/current_release/term/SO:0000384) based on [RF00035](https://rfam.org/family/oxys) - [micF RNA](http://sequenceontology.org/browser/current_release/term/SO:0000383) based on...

RNAcentral should submit mapping between RNAcentral sequences and publications to Europe PMC. External Links service supports linking the data from publications in Europe PMC back to the data resources. Example:...

The RNAcentral Downloads page is very minimal and does not provide enough information about the kinds of information that are available. I suggest organising it similar to [UniProt](https://www.uniprot.org/downloads) and include...

One of the users experienced a problem downloading a ~200Mb fasta file (389,619 sequences) with text search results: > `RNA* AND TAXONOMY:"9606" AND so_rna_type_name:"LncRNA" AND qc_warning_found:"False" AND has_genomic_coordinates:"True"` https://rnacentral.org/export/results?job=6bf68ffd-e38f-403d-bccb-d5e0eef45dd3 The...

RNAcentral - Open Targets integration

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For Open Targets, RNAcentral could provide bibliography, entry descriptions, cross-references, and, in future, secondary structure visualisations (currently Open Targets only looks for this kind of information in UniProt). In RNAcentral,...

Update search logic - AND between facets, OR within a facet

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This will make RNAcentral search consistent with Kayak, Amazon and others. Burkov: Time estimate is: ??? (ballpark of 10-20 days)

Currently RNAcentral does not have a very good collection of fungal mito RNAs but we could obtain them from the following resource: http://mitofun.biol.uoa.gr/download.html http://mitofun.biol.uoa.gr/fasta/gGENE.fasta.zip Ioanna @kalvari used to contribute to...

We need to inform expert databases about the per-database FTP mapping and MD5 files which can be used to create links to RNAcentral. Having links to RNAcentral pages should help...

- [ ] do not propagate GO terms to host genes or precursors (so rRNA precursors should not get the rRNA GO terms and host lncRNAs should not get snoRNA...