AliceJoubert

Hello ! We use Nipype for pipelining in our neuroimaging software tool (Clinica) to interface with known software of the community. This year, SPM12 has released SPM25 and seems to...

The function `compute_atlas_statistics` from `clinica/pipelines/pet/volume/utils.py` contains a `break` which implies only the first atlas AAL2 is processed : https://github.com/aramis-lab/clinica/blob/9a2aa2934ce96954494dab0eb40ebb3602af3129/clinica/pipelines/pet/volume/utils.py#L227-L257 Additionally, atlas statistic files are written with a naming pattern like...

This PR modifies the informations of the `t1-volume` pipeline to recommend SPM25 usage. Technically SPM12 still work on it but it is easier to download SPM25 nowadays. Some code from...

TODO : - for converters ? (should option be exposed if not implemented ?) - caps_name ?

This PR modifies the information and the documentation for the pipeline `PET-Volume` to recommend SPM25 standalone usage. Technically it also works with SPM12 as there were no change on SPM...

There seems to be an incoherence for the `pet-volume` pipeline option validation in the client, happening on the CI machines (Linux) but not on Mac for the ACQ_LABEL and region...

Remove `SynQuick` scripts usage from the anatomical linear pipelines, to replace with `ants.Registration`

Modules on the CI machines should be updated for SPM25 standalone (and previous versions removed).

Integrate SynthStrip from Synthseg into both anatomical linear pipelines. - [ ] Handle the license, how ? - [ ] `t1-linear` - [ ] `flair-linear` Should be based on previous...

Hello, We use BrainStat as a dependency for our software Clinica. First, thanks for continuing to maintain BrainStat. I noticed you released a new version recently, however it was not...