Toshiyuki Yokoyama

@eweitz, thanks for your reply! My use cases are following. * To select genomic variations in *human*: In this case, annotations mean genes, SNPs or SVs, which is shown on...

Thank you for reporting. The appearance of tubemap sometimes seems to collapse on turning checkbox on/off (https://github.com/vgteam/sequenceTubeMap/issues/23). I will look into this behavior.

Thank you for the feedback! As you said, we regarded the input as _H. sapiens_ and thus we used `270000000` as the maximum length as temporally, but, actually we can...

I fixed the truncated reference problem. For the latter data, the gfa file seems to be generated at least. https://github.com/sjackman/gfalint can be used for validation of gfa file.

We defined `.ggf` as a subset of `.gfa`, so `gfalint

Is it possible to try it again on the latest MoMI-G master? MoMI-G tools output is compatible with GFA1 format. I'm sorry that I have no idea why `gfapy` does...

Actually there is a line in vcf that is not parsed by momig-tools, and I intend to output error message when it encounters such a line. But it won't work...

After that, this configuration YAML file is needed to be loaded as the next step. https://momi-g.readthedocs.io/en/latest/configure_file.html The instruction is as follows. https://momi-g.readthedocs.io/en/latest/quick_start.html#how-to-use-your-own-custom-data 1. git clone from https://github.com/MoMI-G/MoMI-G. 2. mkdir static...

Is it possible for you to try it on the latest master and tell me the output of MoMI-G script? I suppose the lines starting with `Error line: ` would...

Thank you for reporting an error. I'll check it. This is an example of chromosome length and color json file. https://raw.githubusercontent.com/MoMI-G/MoMI-G_backend/master/sample/chm1/GRCh.json