Toshiyuki Yokoyama

For config.yaml: Is it possible to add `.bb` file on `data.features` section? ``` bin: vg: "vg" vg_tmp: "vg" graphviz: "dot" fa22bit: "faToTwobit" bigbed: "bedToBigBed" reference: chroms: "static/tomatoCHR.json" data: - name:...

In MoMI-G, after loaded subgraph (and visualized on tubemap), query is published for `/region?format=bed&path=.....`. This can be reproduced by using MoMI-G backend docker with CHM1 demo. > paths.filter(a => !(a.start...

Thank you very much for your detailed report. I now figure out the mechanism this happens. MoMI-G backend handles prefix `chr` and put `indexOfFirstBase` on the response JSON, but had...

> Thank you so much for the fix, it works now!! Good to hear that! > However, with my frontend, there is no download option (or perphaps the page doesn't...

Thank you for letting me know that. I fixed the bug on the latest master. (But the demo page is not fixed yet)

Thank you for reporting. Now the implementation is hard-coded and generated automatically, and I found they are mistakenly regarded as repeats. I'll fix it.

Thank you for your report. I will get back to you soon.

I improved the error message in the latest commit. Is it possible for you to try it again? In general case, when the reference id is different between the VCF...

Thank you for trying MoMI-G. > scripts/vcf2gfa/vcf2pcf.rb:15:in `split': invalid byte sequence in UTF-8 For the first error, the input vcf file might not be encoded in UTF-8. > scripts/vcf2xg.sh: line...

I improved the error message. Is it possible for you to try it with the latest master? In general case, when the reference id is different between the VCF file...