Toshiyuki Yokoyama
Toshiyuki Yokoyama
It seems a corner case bug and I fixed in the latest master. Could you try it again?
I updated the script not to raise the error above `[Failed to fetch sequence in chr1:0--1]`.
The error message seems to come from vg. Could you try it again with the following command? ```bash vg convert -g -p [ggf file] > output.vg ```
I'd like to know if * The input file exists and its file size is greater than zero. * The environment has enough memory quota to mmap the input file....
I updated the script to raise an error if there is an edge record with missing source/target name. It is strange that the size of the output ggf format is...
I updated the script to generate gfa file instead of ggf file. Also, I added an error message when the line is malformed on generating gfa format.
I improved the error message again. However, I suspect the input vcf is not supported in MoMI-G tools. If the current master still raises the same error message, I recommend...
Actually, these variants of VCF are not supported now. For example, the output of RUFUS seems to include SNP records, though MoMI-G tools currently do not support them because MoMI-G...
The list of software is here https://github.com/MoMI-G/MoMI-G#adapt-your-own-dataset. MoMI-G currently does not support SV callers for Illumina.
Historically reason, there are two variants of human reference genome, i.e. GRCh and hg. hg is chr-prefixed reference genome, and the earlier version of GRCh is not chr-prefixed genome. https://www.biostars.org/p/119295/...