Tobias_Yuchen

Hi, I think I have encountered the same problem, velocyto running would filter some gene. I have compared running velocyto after alignment or directly use STARsolo to do the alignment...

Hi, I believe that 10X visium library preparation still follows other 10X products, so you could directly use velocyto --run10X or you could choose Starsolo 2.7.6a or above to perform...

Also found the same problem