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Published 20 hours ago • verified publisher icon tanlabcode

Installation error

Open KaKaPan2022 opened this issue 2 years ago • 3 comments

Hi,

We are recently trying to install the Cytotalk following the manual. However, we have found that the Cytotalk required R version>4.1.0, but the dependencies PCST is based on python, which conflicts with the R4.1. therefore, I am wondering, what's the environment for the Cytotalk?

KaKaPan2022 avatar Apr 13 '22 11:04 KaKaPan2022

Also found the same problem

117999 avatar Apr 15 '22 14:04 117999

Hi,

The R version 4.1.3 and Python version 3.7.3 can be used to install the CytoTalk R package and generate final results successfully. Please try this, thanks.

huBioinfo avatar Apr 16 '22 09:04 huBioinfo

Hi,

We just updated the steps for installing both the "pcst_fast" Python module and the CytoTalk R package. Now all the commands can be run in the R console and have been tested on Windows and macOS. Please see the new branch "feature_RcallPy" (https://github.com/tanlabcode/CytoTalk/tree/feature_RcallPy)

huBioinfo avatar May 05 '22 10:05 huBioinfo