variant-calling topic

gatk4 RNA variant calling pipeline

nf-core

vcfdist: Accurately benchmarking phased variant calls

TimD1

nPoRe: n-Polymer Realigner for improved pileup-based variant calling

TimD1

Variant Calling Pipeline Using GATK4 and Nextflow

gencorefacility

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Clinical-Genomics

Population-wide Deletion Calling

kehrlab

Imputation-beagle-tutorial

adrianodemarino

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

tjiangHIT

find large indels (in the blind spot between GATK/freebayes and SV callers)

brentp

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

IKIM-Essen