copy-number-variation topic

:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package

ShixiangWang

Personal Cancer Genome Reporter (PCGR)

sigven

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

gavinha

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...

AntonioDeFalco

Single-cell copy number calling and event history reconstruction.

cbg-ethz

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

imgag

What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.

Illumina

Allele-specific copy number estimation with whole genome sequencing

DKFZ-ODCF

A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations

rezacsedu

nPoRe: n-Polymer Realigner for improved pileup-based variant calling

TimD1