somatic-mutations topic

DNA sequencing analysis notes from Ming Tang

crazyhottommy

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

ShixiangWang

Microassembly based somatic variant caller for NGS data

nygenome

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

FunGeST

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

getzlab

Detects hotspot regions for somatic mutations in 3D protein structures

KarchinLab

Clone identification from single-cell data

single-cell-genetics

Multi-sample somatic variant caller

IARCbioinfo

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

google

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Clinical-Genomics