variant-calling topic
basevar
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
sentieon-dnaseq
Sentieon DNAseq
kevlar
Reference-free variant discovery in large eukaryotic genomes
ClairS-TO
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
arcsv
Complex structural variant detection from WGS data
grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
minipileup
Simple pileup-based variant caller