biomedical-image-processing topic

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

seung-lab

3D Unet biomedical segmentation model powered by tensorpack with fast io speed

tkuanlun350

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

seung-lab

Tools for computational pathology

Dana-Farber-AIOS

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

ELEKTRONN

ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection

yuanqing811

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

OpenEIT

PyTorch Connectomics: segmentation toolbox for EM connectomics

zudi-lin

Tunable U-Net implementation in PyTorch

jvanvugt

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images

sacmehta