biomedical-image-processing topic
cloud-volume
Read and write Neuroglancer datasets programmatically.
GaNDLF
A generalizable application framework for segmentation, regression, and classification using PyTorch
kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
promise12_segmentation
Codes that I have written to complete promise12 prostate segmentation competition.
torchbiomed
Datasets, Transforms and Utilities specific to Biomedical Imaging
dijkstra3d
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Brain-MRI-Segmentation
Smart India Hackathon 2019 project given by the Department of Atomic Energy
Skin-Lesion-Recognition.Pytorch
Rank3 Code for ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection, Task 3
fastremap
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.