Sigve Nakken

Hi @maximus3219 , I've found the bug, and working on a patch now that ensures proper filtering. best, Sigve

Hi, the current filtering options (AF/DP) should be sufficient, I think. If i understand correctly, you are asking to filter on the allelic counts/depth for the alternative allele. I believe...

Got it, sorry for not getting the point ! I'll add it shorly.

fix implemented in v2.2.5

Hi @maximus3219 Yes, that request should be easy to add - these are fields already present internally, and you're right about the similarity between ALTERATION and PROTEIN_CHANGE - they are...

Hi @Kowen-Angenmed, thanks a lot for reporting this! Would it be possible for you to share the input file (somatic VCF) so I can reproduce the error also on my...

Thanks for the info , I'll have a look.

Just tried the v2.1.2 Conda version on my Mac, and unable to reproduce your error, it processed `T001-COAD.grch38.vcf.gz` fine. So bit unsure how to proceed with respect to your error....

Glad you figured it out:) Enjoy the holiday season. kind regards, Sigve

Hi @yashcrux , Thanks for reaching out. Before I test with your VCF, I wanted to know - are you using the latest PCGR version (2.2.1) when encountering this error?...