Sigve Nakken

Btw: which version of `DOSE` are you running? I think you need at least 3.31 - See https://github.com/YuLab-SMU/DOSE/blob/devel/NEWS.md#dose-3312. Did you manage to upgrade your ClusterProfiler version ? Moving forward, I...

Try new release, that should work, I think. Closing for now.

Hi Sumin, Yeah you need to upgrade ClusterProfiler. Your version 4.6.2 is too old version for oncoEnrichR to work properly. I've tried to set this as a requiment in the...

Hi @user-tq (cc @lhogstrom), Thanks for reaching out! I am glad you find the project useful, and appreciate your time looking into the biomarker matching part. Basically, you are touching...

Hey @user-tq, Was looking a bit more into MET exon 14 skipping mutations. It seems that variants (SNVs) located at the canonical splice site on one end (of the adjacent...

Hi Elena, Just to rule out that your error is not related to your Conda installation: for any of the error cases in question, are you experiencing the same errors...

That's of course understandable. Just curious about the nature of the input somatic calls that causes the error message. Do the VCF files that fail contain calls from chromosome patches...

Hi Elena, Sure thing, please do. `peterdiakumis` and `sigven`, both @gmail.com. thanks! best, Sigve

Hi, Thanks for reporting. Can you indicate your full command, and show/attach the output log? Kind regards, Sigve

Hi, Can you indicate the full command as well? best, Sigve