Sigve Nakken

Hi Andrew, Thanks for reaching out. I am very much interested in looking into this, as I think you point to a gap among available tools. Although your request is...

BTW: here is an example report preview of the forthcoming release, including reference data updates etc: https://www.dropbox.com/scl/fi/93j6o03megarubkrnglio/IMPR-T006_GL_0.cpsr.grch38.html?rlkey=rw7dif1vqqoe0l2hn6za5yy3m&dl=0

Hi Andrew, Quick follow-up on this: you have a dummy VCF with CNVs/SVs I can play with? Realize it may be difficult with patient-sensitive stuff, but you might have your...

Hi @ritikakundra, Thanks for the response. Considering the > 100 different tumor subtypes/diagnoses within TCGA samples which I pointed to, this mapping was not exactly what I was looking for....

Hi Mareike, Thanks for reaching out. I truly understand your need, we will experiment a bit to see how such long sample names could fit in the new version we...

Here is a glimpse of how it will look in the upcoming version (for a dummy sample), seems to work ok. https://www.dropbox.com/scl/fi/p22jglyyzwnbaqjdj5762/ASDF-VB-23-34-000000452384B2-15255XY.pcgr.grch37.html?rlkey=d3w9erg7mqm3fkxyf1i7bd50g&dl=0 best, Sigve

Fixed as addressed in upcoming release.

Hi Sumin, Thanks for reaching out. I am aware of this one, suspect it has to do with the version of `clusterProfiler` that is being used. Can you check your...

Hi, Sumin, Thanks for the feedback. If you are using RStudio, you should be able to see which version of clusterProfiler that have been installed? Either way, I would suggest...

Hi Sumin, Perhaps upgrade `clusterProfiler` to it's latest version? I will try to bump a new version soon that you can test also. best, Sigve