Shifu Chen

@serbulent I am sorry that I haven't implemented this for AfterQC. However, I've implemented another tool `fastp`, which provides most features of AfterQC, and is much much faster than AfterQC...

Which version of fastp did you use? Could you please upload your data, and paste your command here?

Ok, I will revise it soon.

New version solved this problem

This message is usually caused by weird input files (i.e. borken zip files), and this issue should have been fixed in new version. Can you guys try new version? If...

May support up to one INDEL in future implementation.

The source code of defastq will be open after some review process, and then defq project will be terminated since defastq is better.

How about tomorrow?

Hi, the code of defastq is online: https://github.com/OpenGene/defastq

I just planned to raise the same issue :) CRAM is wanted.