petermr

annotate articles with Hypothes.is

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Hypothes.is allows both manual and machine annotation of articles. ContentMine used this 3 years ago with help from the H.is team. # Current tasks. Identify terms in the `oil186/` corpus...

Building ami

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We are going to need to build ami regularly. @Ambarishk can you run maven?

Project Strategy

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# CEVOpen The CEVOpen project is based on: * an open corpus of plant medicinal chemistry articles * Open ContentMine dictionaries for many facets of this science * a group...

NLP extraction of terms

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The very formulaic language ```

https://chemcuration.github.io/chemcuration2019/ ChemCuration (#chemcur2019) is a a one day, online-only conference around data curation and curated data in the domain of chemistry. Inspired by BioCuration and by other online conferences, this...

Add WikidataID refs to articles

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Many open access articles have IDs in Wikidata (i.e the bibliography itself has an ID). For example: The *article* with *title* "Thymus vulgaris essential oil: chemical composition and antimicrobial activity."...

The BJOC has asked for submissions for articles on Open Drug Discovery. I have contacted Mat Todd , the issue organiser and indicated that I/we would be submitting something. This...

Create and test sections

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AMI now creates sections on about 20-30 criteria. Some are small (titles of sections) others are larger (ABSTRACT). I have run ``` ami-section -p oil198 --sections ALL ``` and it...

Analyze `oil1000` for presence of components

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`oil1000` is a 1000 article offset of the Open Access subset retrieved with the query: ``` getpapers -q "((essential oil) AND (chemical composition))" -x -k 1000 -o oil1000 ```

Need to clarify how @mannyrules makes Pull Requests