petermr

Scraper for biorxiv and medrxiv

1

PMR has already written a scraper but it's not optimal and needs cleaning. More later

Communication within project and further

3

We've now got several high-quality volunteers, and I expect more. How do we keep in touch? And how do we allow newcomers (who may not have Git logins and not...

The section tool is not well described in the docs. The command (from the `CProject` directory) seems to work ``` ami-section -p . --forcemake --extract table fig --summary figure table...

PMR has already written a partial scraper for Redalcyc articles but needs integrating. Requires Headless browser. Also ask around.

check dictionaries and add to OpenNotebook

2

Have added dictionaries automatically from `ami3` input from https://en.wikipedia.org/w/index.php?title=Template:Viral_systemic_diseases and https://en.wikipedia.org/w/index.php?title=Template:Viral_systemic_diseases&action=edit in AMIDictionaryTest: ``` @Test public void testCreateFromMediawikiTemplateFile() { String fileTop = "/Users/pm286/projects/openVirus"; String dict = "viral_systemic_disease"; String fileroot =...

creation of dictionaries from wikipedia pages

2

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Some articles have hundreds of subsections which breaks AMI. example. ``` ./PMC6865078/sections/547_*** ``` AMI needs mending