petermr

Use `getpapers` `<...>` style for values

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Please use the `` notation for option values in the `--help`. See, for example `getpapers -h` or `pip -h` for examples ``` --proxy Specify a proxy in the form [user:passwd@]proxy.server:port....

It is ESSENTIAL that ALL options common to `getpapers` and `pygetpapers` are IDENTICAL. Example: ``` getpapers --pdf ``` but ``` pygetpapers --makepdf ``` Changing the options mean that any existing...

📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoAnalysisInstrument (inactive)

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Created simple dictionary by hand (can be incremented later) ``` Hacked from a few papers PMR 20190904 ``` NOTE: `term` is used for searching (maybe with stemming). NOTE: these are...

Document python notebooks

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# documentation Please give a *brief* overview (*.md) of the new functionality in https://github.com/petermr/CEVOpen/blob/master/searches/wikidata_lookup_python_code/compound_lookup_by_pubchem_cid.ipynb The `searches` branch is designed for the results of searches and subsequent analysis.

compound synonyms and stereochemistry

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The compound names in table columns are frequently ambiguous. The first table is https://github.com/petermr/CEVOpen/blob/master/articleAnalysis/oil186/raw/thyme.tsv ``` Compound Compound_dictionary_lookpup E2.0_compound_identifiers notes wikidata_identifier alpha-Thujene (-)-alpha-thujene ; (+)-alpha-thujene C764 ; C786 stereo-isomers of the...

Portentially useful https://www.intechopen.com/books/active-ingredients-from-aromatic-and-medicinal-plants/chemical-structure-quality-indices-and-bioactivity-of-essential-oil-constituents