petermr
petermr
Most of the HTML tables from EuropePMC have headers (` or `) but no explicit footers. However there is usually a transition in content. Typical example: ``` Table 1 Chemical...
# AMI-TABLES extracts compounds and percentages `ami-table` now uses a template file with regexes to extract `compound` and `percentage` columns from tables that contain both. The regex is fairly basic:...
@deadlyvices has been exploring this and reporting in email. ACTION: copy any relevant past emails here...
Manually create a list of all "chemical composition" tables of essential oils. There should normally be one per paper (often but not always Table 1). The title will normally be...
The activity references have been added manually into: https://github.com/petermr/CEVOpen/blob/master/articleAnalysis/oil186/raw/activity20191028.tsv For any article there may be 0,1,2,3... activities (not normally more). For each activity there should be: * mention of measurement...
Table 3 Percentage inhibition of DPPH activity by T. bovei extract and Trolox Concentration μg/ml | % inhibition by T. bovei essential oil ± SD | % of inhibition by...
Activity tables have variable numbers of columns and may have parameters (e.g. concentrations). Ideally we should transform to denormalised (e.g tidytables) but that comes later. Here we try to abstract...
THIS ACTIVITY IS TO FIND THE SECTIONS IN WHICH KEY INFORMATION IS REPORTED. **IT DOES NOT INCLUDE THE INTRODUCTION / BACKGROUND ** each of these will be a separate column....
This dictionary will be small but contain the methods used ot process the plant and extract the oils: ``` Thyme was harvested during the >flowering season< 5080681 The aerial plant...