nipype
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nipy
Workflows and interfaces for neuroimaging packages
### Summary I am running the `Cat12Segment` on a single T1w image. I don't want to run the surface reconstruction workflow so I set `surface_and_thickness_estimation=0`, and `surface_measures=0`. ### Actual behavior...
## Summary Fixes # . FILMGLS is an interface for the FSL utility (film_gls) that fits GLM models to fMRI data. Most of FSL is only compatible with NIFTI files...
Legendre and cosine detrending are implemented almost identically, although with several minor variations. Here I separate regressor creation from detrending to unify the implementations. This now uses `np.linalg.pinv(X)` to estimate...
## Summary Fixes #2162 Fixes #3432 ## List of changes proposed in this PR (pull-request) * Replace `sio.loadmat` with a load function specific for `SPM.mat` files, so it also supports...
### Summary ### Actual behavior import error ### Expected behavior no error ### How to replicate the behavior On 3D Slicer python console : ``` slicer.util.pip_install('nipype') import nipype ``` ###...
I am trying to wrap https://surfer.nmr.mgh.harvard.edu/fswiki/mri_cvs_register The command line is simple, "mri_cvs_register --mov subjID" The problem is I do not completely know all the inputs used in this script (i.e....
I'm aware that traits 6.4.0 introduced breaking changes and that for that reason the version is pinned to `
## List of changes proposed in this PR (pull-request) An interface for MRTrix's [tcksift2](https://mrtrix.readthedocs.io/en/dev/reference/commands/tcksift2.html) as part of the overall effort to include as many as possible of the tools being...
In the freesurfer interface when using the reconall function, not all files generated in the cache_directory are listed as possible outputs that you can use as inputs for the next...
### Summary It should be beneficial to have an interface for MRTrix's [`tcksift2`](https://mrtrix.readthedocs.io/en/dev/reference/commands/tcksift2.html) as part of the overall effort to include as many as possible of the tools being used...
