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REL: 1.8.7

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Preparation for the 1.8.7 release. It's just been a while and we have over 184 commits since the last release. This is not urgent. The following users have made their...

effigies

[WIP] FIX - AFNI Zeropad sets out_file

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## Summary Fixes #3640 . ## List of changes proposed in this PR (pull-request) + Remove `name_template` from `ZeropadInputSpec`, since it is useless if it is not a format string...

zachlindsey

Set number of threads in MRTrix3's interfaces

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The number of threads is configurable through a text file - https://mrtrix.readthedocs.io/en/latest/getting_started/config.html

oesteban

### Summary It would be nice if there was an interface `StringInterpolate` that allowed something like the following: ``` interpolate = utility.StringInterpolate() interpolate.inputs.input_string = "{greeting}, {name}!" interpolate.inputs.greeting = "Hello" interpolate.inputs.name...

zachlindsey

Currently, ```SelectFiles()``` does not leave much room to handle subjects with incongruent file locations. At this point, it is not possible to specify a template pattern that matches paths with...

luisa-sophia

nipype_display_crash could default to the last *pklz file in a directory

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might make life a little easier

berleant

support for gpu queue

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I wrote a simpler implementation of [this](https://github.com/nipy/nipype/pull/2298) old pull request to handle a queue of threads to be executed on GPU. The user can specify the maximum number of parallel...

mauriliogenovese

AFNI Zeropad out_file undefined

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### Summary It looks like something odd is happening with some of the AFNI input specs. Here is the current one for Zeropad: ``` out_file = File( name_template="zeropad", desc="output dataset...

zachlindsey

nipype.interfaces.cat12.preprocess.CAT12Segment does not accept compressed `.nii.gz` files

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### Summary The `Cat12Segment` interface does not accept compressed `.nii.gz` files. Everything works fine when one inputs an `.nii` file. ### Actual behavior This is the error I get: ```...

JohannesWiesner

FIX: evaluate_connect_function should raise error on un-nested imports

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## Summary if I'm understanding [evaluate_connect_function](https://github.com/nipy/nipype/blob/4d1352ade7171fd5f55eff62cee4c99a4f9cfed1/nipype/pipeline/engine/utils.py#L687) correctly, the _intent_ of the if-clause is to catch errors that arise from calling libraries/modules/functions that were imported at the module level (as opposed...

scott-huberty