Mark Keller
Mark Keller
User question: > 1. Is it possible to overlay points on top of an image programmatically? If so, can we manage multiple layers of points that can be toggled on...
See https://github.com/laminlabs/lamindb/issues/2396 We could do a better job of letting the user know that the visualization they are trying to view will not work as expected
Specifically, when to_dense = True
See the Vizarr python API. We should be able to build a wrapper around the existing VitessceConfig API and expose a more Vizarr-like (potentially drop-in alternative to Vizarr) https://github.com/hms-dbmi/vizarr?tab=readme-ov-file#2-python-api ```diff...
This file was at one point manageable, but has grown too large and should be split, probably to one `.py` file per wrapper class, potentially in a subdirectory/module
## Preferred solution Set up `towncrier` https://pypi.org/project/towncrier/ ## Alternative solutions Try a different tool. I don't have experience with towncrier but have seen it recommended
I made this diagram to try to illustrate the point storage idea I was attempting to explain on Wednesday at the Basel Hackathon. The idea would be to use OME-NGFF...
**Is your feature request related to a problem? Please describe.** Currently, spatialdata stores Shape elements on-disk using WKB-encoded parquet files, since this is the GeoPandas default of [geopandas.to_parquet](https://geopandas.org/en/stable/docs/reference/api/geopandas.GeoDataFrame.to_parquet.html) - see...
Zarr support
Fixes #91 These changes are from both me and @Artur-man The main public-facing changes here are: - The `ZarrAnnData` class - `read_zarr` and `write_zarr` top-level functions - Support for `from_Seurat(output_class="ZarrAnnData")`...