Mark Keller
Mark Keller
**User story** Plugin file types may need to allow custom `options` in file definitions. Currently, schemas for `options` are captured in the full view config schema. We do not allow...
**User story** Developers who embed Vitessce into data portals are interested in reducing - load times - browser memory overhead - data egress costs **Preferred solution** Create simulated datasets of...
**User story** Users are interested in reducing the initial load time and resources for a vitessce instance, but unaware of the expression matrix subsetting/filtering options.
**User story** Users who are used to the cellxgene interface want the same thing in Vitessce. **Preferred solution** We can implement a cellxgene-style cell set manager as another option. It...
**User story** Projects like KPMP need support for visualization of multiple patient samples on the same UMAP scatterplot, with controls for selecting patients and then rendering patient-specific images. **Preferred solution**...
**Describe the bug** Vitessce fails to load OME-TIFFs that are missing Pixels.PhysicalSizeXUnit (/ YUnit) in the OME-XML. In https://github.com/tlambert03/ome-types/issues/144, I learned that this is an [optional](https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html) property in the OME...
**User story** **Preferred solution** **Possible alternatives**
**User story** https://twitter.com/seflless/status/1544715890238840833?s=21&t=LDzNTxG1XoHoR7OFSqNWvw **Preferred solution** **Possible alternatives**
**User story** ```[tasklist] ### Tasks - [x] Shapes - circles (with fixed radius) - [ ] Shapes - circles with radius column - [ ] [Shapes - polygons](https://github.com/vitessce/vitessce/issues/1835) - [...
**User story** With support for plugins, we could refactor Vitessce into separate packages in a monorepo. A main package `vitessce` could just be a core package (see https://github.com/keller-mark/vit-s) plus initial...