Mark Keller

**User story** Not sure if it should be a standalone view (may take up too much space) or a kind of sub-view of the volcano plot (#1324) **Preferred solution** **Possible...

Define a plugin class/dataclass to couple on_config_change and anywidget.invoke handlers with plugin_esm

1

Certain types of plugins will entail both custom JS and Python functions that need to work together. #337 documents the support for plugin_esm, but we should add a way to...

It would be useful to demonstrate the comparative visualization features, and the data processing steps that are required, if we can use them within a Jupyter notebook context. A follow-up...

Fixes #347 TODO: - ensure `VitessceConfig.add_view` allows adding plugin views with names it does not know about - allow for `VitessceConfig.add_view` to add view that lacks a `dataset` or `dataset_uid`?...

https://github.com/manzt/anywidget/blob/6f8445e17300342624cbb117f163815eae89f77b/anywidget/_file_contents.py#L11

As suggested in #339 > As a ease of use functionality, It would be handy if colors could be manually set with the `adata.uns[f"{obs_category_column}_colors"]` which is a list of RGB...

CRAN preparations

8

Resources: - https://cran.r-project.org/web/packages/policies.html - https://kbroman.org/pkg_primer/pages/cran.html - https://cran.r-project.org/web/packages/submission_checklist.html Things to do/check - [x] `R CMD check --as-cran` - [x] Please ensure that R CMD check --as-cran has been run on the...

Currently, the deployment workflow fails for PRs until merged into main which results in red X status indicators even when the test workflow passes. The deployment CI workflow should not...

Update Promise.try description

3

### Description Clarifications in the description of `Promise.try`. ### Motivation The current `Promise.try` description is quite confusing. If `Promise.try` is "exactly equivalent" to the first example, then the second example...

Command functions should be able to return an updated config

1

Chat plugin should be able to both return a string and also return an updated config dict (optionally). Need to update the python APIs to enable this (would be similar...