Mark Keller

Support Starfish data objects

4

https://spacetx-starfish.readthedocs.io/en/latest/index.html Example datasets: https://spacetx-starfish.readthedocs.io/en/latest/api/datasets/index.html

https://www.dropbox.com/s/cmbvq2og93lnl9z/pbmc_10k_v3_filtered_feature_bc_matrix.h5?dl=1 Also see Seurat's `Read10X` function

Even though the seurat ecosystem is primarily based in R, I believe the h5Seurat file is just an HDF5 file which should be able to be loaded in Python as...

Support MuData objects

1

https://mudata.readthedocs.io/en/latest/

https://www.biorxiv.org/content/10.1101/2022.06.10.495510v1 https://github.com/ckmah/bento-tools

https://github.com/aristoteleo/spateo-release

https://github.com/Mr-Milk/SpatialTis