Mark Keller

May depend on resolution of https://github.com/vitessce/vitessce-python/issues/206, https://github.com/jupyter/nbconvert/issues/1900, https://github.com/jupyter/nbconvert/pull/1934

```sh pip install "vitessce[all] @ git+https://github.com/vitessce/vitessce-python.git@keller-mark/mudata-genomic-profiles" ``` add to readme

https://github.com/vitessce/vitessce-python/issues/239

Figure out why omero metadata might be within multiscales[0] rather than at root level of .zattrs

2

Vitessce is expecting the "omero" property to be in the root of the .zattrs dict, but it is within multiscales for some reason (Perhaps this was always a valid location...

Once flattened for the JSON representation, there is not currently a way to convert this back to a nested object/dict for `link_views_by_dict` / `add_coordination_by_dict`.When one of these functions generated the...

```py def optimize_df(df): for col in df.columns: df[col] = optimize_arr(df[col].values) return df ```

Validate configs on python side using `@vitessce/json-schema` NPM package

1

https://www.npmjs.com/package/@vitessce/json-schema https://unpkg.com/browse/@vitessce/[email protected]/dist/

error with UJSONResponse with Starlette v0.28.0

1

Starlette v0.14.0 seems to work but not v0.28.0

https://github.com/BiocPy/SingleCellExperiment