C. Titus Brown

hi @morsecodist please see https://github.com/sourmash-bio/sourmash/pull/2230#issuecomment-1685487391 - @luizirber is splitting out the big PR into many small bits! In particular, for now, we suggest going this route, >I could add it...

super strange! thanks for reporting! definitely seems like a bug 😭 You might try the `singlesketch` command from the branchwater plugin, note.

hi @kullrich, a few more thoughts for you! diamond and last do alignments, which might be more appropriate for distant homology/similarity analysis. It's not a use case we've explored specifically,...

super cool, thanks for the reference!

more in a bit, but: what is the sum of `f_unique_weighted`? And what does `sourmash gather` report as the % weighted assigned? In brief: sequencing errors cause a lot of...

You also might have to do a sketch with `-p abund`, e.g. `sourmash sketch dna -k 31,abund` or some such.

This took a while to track down and resolve fully; see https://github.com/sourmash-bio/sourmash/pull/3711 for too many details! Once that PR is merged and we release sourmash v4.9.4, you can use `--use-abund`...

sourmash v4.9.4 has been released to a pypi and a conda-forge near you!