Christian Meesters

And? The reason is different, I hope. What does your log tell you?

Do not run `sbatch `: When Snakemake will submit jobs within job context, it will inherit the environment of the job, including all defaults, which can lead to unpredicted behaviour.

Contact your admins and kindly request to avoid killing processes without reason. Snakemake, except for local rules like downloading or plotting, creates no load on the login or head nodes....

With version 0.7.0 a warning is issued when attempting to submit in a job context. Please understand that we cannot ensure a working setup, when you try that. We cannot...

One more thing, which might help to overcome performance issues in cluster environments: I/O contention can be a serious issue, particularly with many concurrent alignment jobs in bioinformatics. Hence, Snakemake...

> Does that make sense I'm afraid, no. Please describe your issue concisely, open a new issue, and point to the code in question. A hundred alignments and some extra...

hm, I cannot reproduce your zero error code: ```shell $ snakemake .... # all settings in the profile, no special flags ... Error: maximum number of parallel jobs/used nodes has...

> Some tools will accept an empty string, but that or no argument both seem confusing to me. I'm afraid, but this is due to the default behaviour from the...

Hi, Apparently, you are using a wrapper around Snakemake - and an outdated version of Snakemake. Please update and try again. If it fails, you might want to address the...

Which version of Snakemake are you using? Run `snakemake --version`. Snakemake version v6.x is gone for years. If it is a current version of Snakemake - what is the error...