Christian Meesters
Christian Meesters
``` AttributeError: 'GroupJob' object has no attribute 'logfile_suggestion' ``` This is no property introduced (or not introduced) by the SLURM_Executor. ``` AssertionError: expected successful execution ``` Me too, ;-)
sorry for looking to late into this issue - since Snakemake v8 the [executor code for SLURM has its own repo](https://github.com/snakemake/snakemake-executor-plugin-slurm). Does the issue persist for you after updating?
This PR is feature incomplete. Shall we find a time to complete it? I don't feel confident enough to proceed.
Perhaps of interest in this regard: https://github.com/mlco2/codecarbon/pull/431 After all, we are not particularly interested in the footprint of machines or Snakemake itself, but rather of the triggered processes.
Should this rather be addressed in the corresponding profiles repo? see https://github.com/Snakemake-Profiles/lsf
Sorry, I did not see this issue. Are you using the `snakemake-executor-slurm` plugin? For this is completely agnostic to the underlying database (SLURM can be configured to do its accounting...
As far as I can see, a profile with ``` slurm_extra: "'--gres gpu:1'" ``` gets accepted on submission, but fails in a job context, right?
I will prepare a simple PR.
Please try: `slurm_extra: "'--gres=gpu:1'"`. Why? Because `slurm_extra: "'--gres=gpu:1 --nice=100'"` ought to work, too. However, it seems to me that this is only a partial fix. Human-readable runtime specs in a...
In these threads there might be someone overlooking something and this someone might be me. Such things just happen. I only looked at point two, when writing. Sorry. I am,...