Christian Meesters

no, the issue is fixed. I do not run into any issues in this regard. If you run into any, please report in the slurm-executor repo - be sure to...

Right, on an HPC cluster with SLURM and snakemake >=v8 (better most recent snakemake version and plugins), a cancelled job will be recognised as such. @erfanshekarriz Please update and test.

Ah, sorry, just screening older issues > but I can't figure out what the Slurm jobstep executor is doing. My LSF experience is a bit rusty, but I don't think...

Right, you need to trigger with `--verbose`.

BTW just to avoid misunderstandings > I'll see about removing jobstep, thanks. I do not know whether this is meant to drop the idea of a jobstep executor entirely. No,...

Sure thing! It's just that the last few weeks have been super stressful, and I am taking a week off. Thereafter, I am going to conduct an RDM course. edit:...

[See report in the executor plugin](https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/41). A fix for the executor plugin is in progress. Fixing this downstream is not on the agenda. Sorry for not noticing this issue.

Hi, Sorry, I overlooked this issue - since snakemake v8 the [executor code for SLURM lives in its own repository](https://github.com/snakemake/snakemake-executor-plugin-slurm). Now, the bug probably persists: We did not anticipate a...

You can also try and see whether the proposed fix (see the link about in this thread) fixes the issue, already.

Huh? Ok, my fix ought to work for accounts containing whitespace. But here it would assume, that your account is literally `115 genetics coe`. That is a bit ... peculiar....