gnomad-browser
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broadinstitute
Explore gnomAD datasets on the web
Currently, variants can be searched for by chrom-pos-ref-alt ID or dbSNP rsID. Add support for additional identifiers such as ClinGen CAID, HGVS, etc.
Add protein domains (from VEP annotations) to variant tables.
* [x] #553 * [x] #554 * [x] #555 * [x] #559 * [x] #566 * [ ] #581 * [x] #624 * [x] #647 * [x] #677 * [x]...
On the transcript page, add an optional column to the variant table that shows which exon the variant falls in (if any). Does numbering include only coding exons or UTRs...
Show a breakdown of the number of ClinVar variants in each clinical significance category in each consequence category.
Genes and transcripts currently have generically named ID fields `gene_id` and `transcript_id`. `ensembl_gene_id` and `ensembl_transcript_id` fields should be added to clarify that these are Ensembl genes/transcripts.
API containers take a long time to terminate. I suspect it's because the API does not handle SIGTERM/SIGINT and thus ends up getting killed after some timeout. https://github.com/BretFisher/node-docker-good-defaults#production-minded-features
On the gene/transcript pages, the browser does not show variants in UTR or non-coding transcript regions. Those should be marked so that it's clear that while variants are not shown...
Flag genes with certain issues. Relevant gene level flags should also show up on the variant page for variants in those genes. Related to #40, #641, #765 https://atgu.slack.com/archives/CNNTF8Z46/p1606936278179300
When hovering over a tracks, show a line to make it easy to match up information between tracks. Preferably, show a marker next to the line with information about features...