gnomad-browser
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broadinstitute
Explore gnomAD datasets on the web
Possibly using Stackdriver Error Reporting * https://cloud.google.com/error-reporting/ * https://github.com/GoogleCloudPlatform/stackdriver-errors-js
Discussion at https://atgu.slack.com/archives/CNNTF8Z46/p1639073008051400.
Upgrade Elasticsearch to version 7. Should be able to [restore data from a snapshot](https://www.elastic.co/guide/en/elasticsearch/reference/current/snapshot-restore.html) instead of re-indexing everything.
Automatically delete all but the last n snapshots using snapshot lifecycle management. https://www.elastic.co/guide/en/elasticsearch/reference/current/snapshot-restore.html
Given a variant, find all other variants that *should* have co-occurrence results with that variant (can't simply search the co-occurrence index). Show a table of those variants with links to...
gnomAD contains only SNVs/indels. However, the browser search allows entering a complex variant in chrom-pos-ref-alt format or a ClinGen CAID or ClinVar variation ID for a complex variant. If such...
Some genes have MANE Plus Clinical transcripts as well as MANE Select transcripts. These should be displayed on the gene page as well.
We get lots of questions related to the fact that filtered variants are hidden by default on the gene/region/transcript pages. It should be clearer when there are variants that are...
Some genes (for exmample, ENSG00000260458 / KCNJ18) exist in Gencode v29 but not v19. Since they're in the database, they show up in search results. But viewing the gene page...
For example, the liftover variant ID for [7-142119946-G-A](https://gnomad.broadinstitute.org/variant/7-142119946-G-A) is ID `7_KI270803v1_alt-495597-C-T`.