DRAM

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Error when setting up databases

5

Hi DRAM developers, This is amazing tools, it will help me annotate MAGs function. But I encountered some problems when I set up database, could you help me to solve...

microbial-cookie

Hi, I am using DRAM version 1.4.6 and trying to set up the database. I was running DRAM-setup.py prepare_databases --output_dir DRAM_data and encountered the following errors: 2023-09-23 06:20:38,159 - The...

wuhuiyun07

Errors about summariziung anntotations

1

There is something wrong about summariziung anntotations. After typing commons like this: DRAM-v.py distill -i dramv-annotate/annotations.tsv -o dramv-distill. it will give me this feedback. TypeError: Index(...) must be called with...

galaxysxk

Hello, keep having this ERROR: 2023-09-24 17:15:28,613 - Logging to console 2023-09-24 17:15:31,034 - The log file is created at /home/fricci/rp24/fra/analyses/ostreobium_bacteria_interactions/DRAM/annotation$ 2023-09-24 17:15:31,036 - 150 FASTAs found 2023-09-24 17:15:31,044 -...

francesco-ricci

Hi, I'm to check my usage of DRAM is appropriate, in terms of maximizing computational efficiency. I specified using 32 threads for annotate on HPC, and I used `htop` to...

ganiatgithub

Hi DRAM developers, This is amazing tools, it will help me annotate MAGs function. But I encountered some problems when I set up database, could you help me to solve...

microbial-cookie

Hello! I was hoping you could help me find the default prodigal command used by DRAM. I know that DRAM uses anonymous/metagenome mode, but I was wondering there are any...

bck243

Hello developer! I have previously ran DRAM on my HPC with no problems. Now I want to run it over a different set of genomes and I got the following...

Valentin-Bio

Hi Developer, Is there a database in small size for testing？

fujch7

Hi there, We have DRAM (1.4.6) set up with the full KEGG database, which has been working ok. But I recently wanted to run some viral contigs using kofam instead...

mlhoggard