DRAM

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Hi, I have installed the latest DRAM version 1.4.56. in our HPC clusters. I am facing some issues with database download via automatic command. Pls, see the attached log file....

srisvs33

Hi, my database processing stopped with an error, possibly because it ran out of space (although I'm not sure). Is there a way to resume it after clearing some space?...

ellasiera

Have you considered a flag to point out unexpected combinations of annotations that hint of either a Nature paper level discovery or genome contamination? An example could be the discovery...

Kirk3gaard

Hello, I want to make a Table with DRAM products modules and their KO/CAZZy associated (like the one for the heatmap but with all 100 products), is there a table...

JoseLopezArcondo

Calling program has OMP_PROC_BIND set in its environment. Please unset OMP_PROC_BIND.

2

Dear All, I am trying to prepare databases for DRAM. I got the following error: DRAM-setup.py prepare_databases --output_dir DRAM_data /dss/dsshome1/0F/ra78zut/miniconda3/lib/python3.10/site-packages/mag_annotator/database_handler.py:123: UserWarning: Database does not exist at path None warnings.warn("Database does...

MonicaSteffi

"Present in contig" in dramv distill product heatmap

1

Hello! What does "present in contig: true/false" mean in the heatmap? Only a few contigs are labelled as "true" for named vMAG functions (6 out of 45). Does this mean...

ereyred

Apparently you are using only the best hit for CAZy . is there a better option?

2

https://github.com/WrightonLabCSU/DRAM/blob/ac83ba7c6ed081c68abca6290be55a6ba7d28865/mag_annotator/summarize_genomes.py#L45

SilasK

Regarding Viral AMG classification

11

Hi, and many thanks for the excellent annotation tool. I have a query regarding viral AMG annotation. I have a bunch of viral contigs identified through metagenomics. The contigs were...

ShailNair

Eukaryotic MAGs/assemblies

2

Hi! Please, is DRAM suitable for the annotation of fungal assemblies? Thank you!

andressamv

Hello, I am preparing the database using `DRAM-setup.py prepare_databases --output_dir DRAM_data --threads 40` . All databases were downloaded successfully and processed also but in the end, it got killed: >...

sahilrishav2