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default prodigal command request

Open bck243 opened this issue 2 years ago • 0 comments

Hello! I was hoping you could help me find the default prodigal command used by DRAM. I know that DRAM uses anonymous/metagenome mode, but I was wondering there are any other non-default parameters (e.g. using the '-m' flag to prevent prodigal from making predictions that span "N" containing stretches)? I am trying to figure out if the ORFs I already called with prodigal independent from DRAM will be identical to the ones annotated by DRAM. Thanks so much! Bethany

bck243 avatar Sep 13 '23 20:09 bck243