memilio

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### Feature description For the AIMS project, we need to add post-acute infection syndroms to the model. These should reflect long-term negative syndroms, as in Long-Covid. ### Additional context It...

DavidKerkmann

### Feature description How to set up protection from vaccinations and infections against successful transmission, high viral load, severe symptoms AND newly against PAIS is an open question. Here, we...

DavidKerkmann

ABM Paper: Logger

2

### Motivation / Current Behaviour Several loggers got implemented. ### Enhancement description Implement loggers from the paper ### Additional context _No response_ ### Checklist - [x] Attached labels, especially loc::...

xsaschako

Implement an endemic IDE model. For this we need to adapt the current solver.

hatrit

Performance of Eigen code and compiler flags

1

### Motivation / Current Behaviour Memilio uses Eigen with expression templates, and some function explicitly return Eigen expressions using `auto` as return type. This code easily gets very complex for...

melven

### Provide a description of requested documentation changes. In [https://github.com/SciCompMod/memilio/blob/main/cpp/simulations/README.md](https://github.com/SciCompMod/memilio/blob/main/cpp/simulations/README.md) it says that the folder contains three different simulations which is not true.

kilianvolmer

Provide mobility rules as input to ABM Model.

1

### Motivation / Current Behaviour In the perform_mobility function of abm::Model the mobility rules used are hard coded although the class does have an attribute m_mobility_rules. This attribute is currently...

jubicker

Currently, in the IDE model for `m_transitiondistributions_support_max` and `m_transitiondistributions_derivative` are CustomIndexArray where we store vectors or vectors of vectors for every AgeGroup. In these cases, we can also use InfectionTransition...

annawendler

### Bug description A lot of places are using the [AGS](https://en.wikipedia.org/wiki/Community_Identification_Number) to store information related to regions. In code integers are used to represent these ids, like here: https://github.com/SciCompMod/memilio/blob/339768e73182d7574fa3de1bc7b5d69bfdff0e4a/pycode/memilio-epidata/memilio/epidata/defaultDict.py#L206 This...

JonasGilg

### Feature description As already done for ODE and ABM models, we want to implement an IDE model with waning immunity. ### Additional context _No response_ ### Checklist - [x]...

annawendler