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Modular spatio-temporal models for epidemic and pandemic simulations

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Analyse the performance of our ABM implementation. 1. compare our implementation with covasim and majid's python abm 2. check scaling behavior by using increasing numbers of agents 2. use a...

class::discussion
loc::backend
model::abm

As a general goal for the redesign of the backend, we want a situation where it is easy to create new models, or adapt existing models by copy-pasting a directory....

prio::low
class::discussion
loc::backend
model::abm
model::ode
model::ide
Epic

In order to model mobility explicitly, transport nodes have to be introduced in ABM.

class::feature
prio::low
status::on hold
loc::backend
model::abm

The distribution of contacts of a person should follow the data that is available. Often, surveys give contact matrices between age groups in different contexts. A coefficient a_ij of a...

class::feature
status::on hold
loc::backend
model::abm

# Changes and Information Please **briefly list the changes** (main added features, changed items, or corrected bugs) made: - add visualization for the abm runs. - - If need be,...

### Motivation / Current Behaviour No tests there, need some ### Enhancement description add tests ### Additional context _No response_ ### Checklist - [ ] Attached labels, especially loc:: or...

good first issue
prio::moderate
loc::backend
model::abm
class::improvement

### Motivation / Current Behaviour _No response_ ### Enhancement description TBD with others when going through changes @ infection in paper ### Additional context Differences i found: 1. We deleted...

prio::moderate
loc::backend
model::abm
class::improvement

### Motivation / Current Behaviour Currently, there is no possibility to add specific movements to a graph like "x people move from a to b on day y". ### Enhancement...

class::feature
status::in progress
loc::backend

![Image](https://github.com/user-attachments/assets/e03adefe-1637-48ba-8265-de71123482bd) ![Image](https://github.com/user-attachments/assets/0befa46c-914b-4bfd-838c-c172ce6c8aa3) ![Image](https://github.com/user-attachments/assets/08a735b0-8f18-4427-8fae-d80598ff0a0a) ### Motivation / Current Behaviour No Plotting functions for abm We try to be as close as possible to [this paper of us](https://www.sciencedirect.com/science/article/pii/S0025556421000845?via%3Dihub) ### Enhancement description We...

prio::moderate
loc::backend
loc::python interface
model::abm
class::improvement

We need to validate that the gammas in the IDE do not affect the proportion between two compartments, i.e. that they do not interfere with the \mu s.

class::discussion
model::ide